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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 144.0
Min RPKM: 44.4
Std RPKM: 18.8
Median RPKM: 60.2
GTEX-1192X-2526-SM-59868
50-59 years, male
144.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
118.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
110.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
109.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
104.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
104.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
99.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
99.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
99.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
98.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
94.3
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
92.5
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
91.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
85.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
84.2
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
84.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
83.6
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
80.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
80.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
77.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
76.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
76.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
76.3
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
75.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
73.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
71.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
70.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
69.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
69.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
68.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
67.7
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
66.9
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
65.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
65.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
64.7
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
64.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
63.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
63.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
62.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
62.7
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
62.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
61.7
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
61.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
60.3
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
60.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
60.0
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
59.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
59.8
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
59.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
59.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
59.3
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
59.2
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
58.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
58.0
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
57.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
57.6
GTEX-13113-1226-SM-5EGHT
60-69 years, female
57.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
57.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
56.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
56.4
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
55.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
55.4
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
55.1
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
54.5
GTEX-ZTSS-0926-SM-59865
40-49 years, male
54.3
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
54.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
54.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
53.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
53.8
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
53.7
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
53.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
52.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
52.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
52.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
52.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
51.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
51.6
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
51.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
51.2
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
51.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
50.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
49.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
48.9
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
48.4
GTEX-1122O-1326-SM-5H11F
60-69 years, female
48.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
47.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
47.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
44.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.