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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 905.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 592.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 641.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 323.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 557.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 486.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 404.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 445.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1156.9
Min RPKM: 3.2
Std RPKM: 176.6
Median RPKM: 210.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1156.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1095.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
714.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
626.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
575.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
569.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
556.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
553.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
544.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
489.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
455.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
422.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
413.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
402.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
390.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
376.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
368.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
366.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
363.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
363.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
357.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
344.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
342.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
340.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
333.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
332.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
317.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
315.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
311.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
308.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
300.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
297.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
296.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
288.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
288.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
278.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
276.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
263.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
259.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
258.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
257.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
257.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
254.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
238.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
238.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
238.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
236.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
233.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
232.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
229.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
225.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
223.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
223.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
222.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
221.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
216.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
212.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
211.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
210.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
210.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
210.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
206.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
205.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
203.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
201.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
200.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
196.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
193.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
179.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
179.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
179.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
178.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
175.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
174.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
172.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
172.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
171.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
169.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
167.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
165.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
164.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
164.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
163.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
158.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
155.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
155.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
152.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
151.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
147.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
140.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
139.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
136.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
135.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
135.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
126.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
125.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
123.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
118.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
116.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
113.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
112.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
111.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
109.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
106.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
103.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
101.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
94.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
89.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
87.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
81.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
69.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
68.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
54.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
35.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
31.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
22.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
17.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
5.4
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
3.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.