We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 536.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 226.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 234.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 421.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 413.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 397.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 363.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 479.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 600.2
Min RPKM: 116.0
Std RPKM: 87.7
Median RPKM: 241.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
600.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
540.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
538.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
522.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
492.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
484.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
463.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
386.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
385.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
383.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
364.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
360.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
351.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
341.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
341.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
337.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
335.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
334.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
324.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
323.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
320.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
314.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
311.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
310.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
306.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
306.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
304.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
302.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
301.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
300.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
296.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
292.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
290.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
286.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
284.5
GTEX-RU72-1426-SM-46MUF
50-59 years, female
284.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
282.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
281.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
280.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
279.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
272.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
270.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
265.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
264.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
263.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
263.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
260.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
258.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
256.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
254.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
253.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
253.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
252.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
249.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
248.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
247.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
247.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
242.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
241.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
241.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
240.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
240.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
239.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
239.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
238.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
237.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
237.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
236.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
235.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
233.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
231.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
230.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
229.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
228.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
226.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
223.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
223.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
223.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
220.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
218.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
217.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
216.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
215.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
215.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
213.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
213.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
211.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
211.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
210.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
208.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
205.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
203.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
201.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
200.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
197.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
196.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
196.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
191.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
188.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
188.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
186.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
185.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
185.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
180.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
175.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
173.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
173.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
170.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
168.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
165.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
156.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
153.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
150.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
143.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
140.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
137.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
135.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
118.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
116.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.