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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 340.2
Min RPKM: 66.3
Std RPKM: 56.8
Median RPKM: 139.7
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
340.2
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
299.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
265.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
262.9
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
257.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
255.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
250.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
244.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
241.7
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
239.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
235.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
224.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
214.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
196.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
195.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
194.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
192.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
191.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
190.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
189.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
188.9
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
188.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
188.2
GTEX-1192X-2526-SM-59868
50-59 years, male
183.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
183.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
176.8
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
176.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
173.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
171.1
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
169.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
167.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
165.0
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
164.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
162.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
161.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
153.0
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
152.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
152.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
149.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
147.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
147.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
145.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
145.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
141.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
138.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
136.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
135.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
135.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
133.2
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
132.3
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
132.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
131.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
131.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
130.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
126.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
125.3
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
123.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
121.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
121.1
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
119.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
118.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
114.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
112.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
111.7
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
106.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
105.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
103.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
103.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
99.2
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
99.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
96.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
94.9
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
93.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
91.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
89.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
88.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
88.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
87.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
87.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
87.0
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
87.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
86.3
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
86.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
83.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
83.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
72.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
71.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
66.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.