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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 270.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 97.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 73.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 167.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 184.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 142.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 133.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 204.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 294.4
Min RPKM: 19.5
Std RPKM: 56.0
Median RPKM: 144.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
294.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
283.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
273.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
267.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
262.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
250.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
246.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
244.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
244.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
239.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
237.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
226.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
224.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
224.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
218.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
215.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
212.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
212.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
211.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
206.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
205.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
204.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
199.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
195.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
194.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
191.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
187.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
182.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
181.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
176.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
176.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
176.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
176.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
175.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
174.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
174.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
173.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
173.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
171.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
166.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
165.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
165.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
165.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
164.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
163.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
162.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
162.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
160.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
155.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
155.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
154.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
154.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
153.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
152.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
151.9
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
151.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
148.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
146.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
145.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
144.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
143.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
142.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
141.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
139.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
139.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
136.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
136.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
135.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
134.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
134.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
132.7
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
132.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
131.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
131.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
130.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
130.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
126.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
125.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
124.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
124.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
122.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
119.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
117.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
117.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
117.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
116.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
116.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
115.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
115.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
114.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
112.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
111.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
110.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
108.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
107.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
106.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
103.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
101.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
99.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
99.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
98.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
91.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
88.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
87.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
87.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
87.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
86.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
86.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
82.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
74.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
59.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
59.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
55.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
55.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
53.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
47.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
41.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
24.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
19.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.