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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 304.7
Min RPKM: 42.8
Std RPKM: 48.6
Median RPKM: 101.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
304.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
212.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
203.1
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
202.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
192.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
191.5
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
185.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
183.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
176.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
176.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
174.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
168.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
168.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
161.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
157.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
157.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
156.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
154.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
148.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
143.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
142.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
139.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
138.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
137.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
135.0
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
134.0
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
133.1
GTEX-ZTSS-0926-SM-59865
40-49 years, male
130.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
129.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
129.8
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
127.5
GTEX-1192X-2526-SM-59868
50-59 years, male
126.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
124.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
123.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
122.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
121.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
120.4
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
113.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
112.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
109.4
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
108.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
106.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
105.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
103.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
100.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
99.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
99.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
96.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
95.2
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
93.8
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
91.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
90.3
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
89.4
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
87.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
85.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
83.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
80.5
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
78.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
78.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
77.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
75.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
75.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
75.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
74.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
74.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
72.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
71.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
70.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
70.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
69.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
69.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
66.2
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
65.1
GTEX-13111-1426-SM-5DUW3
50-59 years, male
63.7
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
62.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
60.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
59.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
57.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
56.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
55.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
52.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
51.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
49.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
47.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
46.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
46.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
45.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
42.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.