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COLON - Expression summary
RNA expressioni
HPA:12.8TPM
GTEx:46.8RPKM
FANTOM5:95.5Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 12.8
overview Male, age 54 Sample 1
TPM: 11.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 17.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 34.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 5.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 20.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 11.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 46.8
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 64.9
Samples: 149

Max RPKM: 128.1
Min RPKM: 18.2
Std RPKM: 19.1
Median RPKM: 61.5
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 128.1
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 119.4
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 112.6
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 108.9
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 108.4
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 107.7
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 103.0
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 102.8
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 100.8
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 97.7
Show all
Colon - Transverse
RPKM: 33.0
Samples: 196

Max RPKM: 141.1
Min RPKM: 3.4
Std RPKM: 26.8
Median RPKM: 23.0
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 141.1
GTEX-11GSP-1626-SM-5986N 60-69 years, female 120.1
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 107.5
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 106.9
GTEX-Y114-1526-SM-4TT79 50-59 years, female 98.8
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 98.5
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 97.4
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 96.5
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 90.6
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 86.3
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 95.5
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 84.8
FF:10014-101C5 62,83,84 years, mixed 95.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.