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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 4036.0
Min RPKM: 0.5
Std RPKM: 849.7
Median RPKM: 549.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
4036.0
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
3629.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
3376.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
2821.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
2753.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
2367.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
2351.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
2271.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
1975.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
1927.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
1912.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
1873.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
1715.5
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
1603.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
1546.7
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
1440.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
1416.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
1351.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
1319.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
1315.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
1308.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
1194.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
1127.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
1092.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
1017.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
1001.3
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
889.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
838.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
796.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
779.9
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
760.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
732.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
721.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
700.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
699.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
690.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
687.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
683.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
670.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
663.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
659.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
616.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
612.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
554.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
545.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
537.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
534.9
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
485.1
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
456.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
456.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
440.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
438.6
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
425.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
410.6
GTEX-13O61-1326-SM-5KM31
60-69 years, male
396.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
391.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
386.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
369.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
368.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
368.3
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
359.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
356.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
331.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
326.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
299.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
288.1
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
281.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
278.2
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
275.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
253.0
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
221.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
209.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
201.1
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
149.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
136.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
125.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
100.0
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
91.4
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
79.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
70.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
26.1
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
20.8
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
20.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
17.2
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
6.8
GTEX-117YX-0326-SM-5GICL
50-59 years, male
5.8
GTEX-1192X-2526-SM-59868
50-59 years, male
2.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
0.5
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.