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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 112.1
Min RPKM: 19.9
Std RPKM: 17.9
Median RPKM: 51.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
112.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
111.2
GTEX-1192X-2526-SM-59868
50-59 years, male
92.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
84.8
GTEX-117YX-0326-SM-5GICL
50-59 years, male
84.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
83.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
81.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
76.3
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
73.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
73.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
69.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
69.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
68.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
67.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
67.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
67.4
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
66.2
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
66.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
65.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
64.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
63.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
62.4
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
61.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
61.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
61.0
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
59.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
58.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
58.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
57.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
57.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
57.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
57.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
56.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
54.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
54.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
54.4
GTEX-13111-1426-SM-5DUW3
50-59 years, male
54.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
54.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
54.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
53.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
52.5
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
52.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
51.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
51.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
51.5
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
50.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
49.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
47.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
46.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
45.9
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
45.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
45.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
45.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
44.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
44.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
44.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
43.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
43.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
43.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
43.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
42.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
42.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
42.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
41.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
41.2
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
40.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
40.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
39.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
39.8
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
39.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
38.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
38.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
36.7
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
34.7
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
34.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
33.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
32.9
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
31.0
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
30.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
30.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
29.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
28.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
27.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
25.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
25.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
24.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
24.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
19.9
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.