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COLON - Expression summary
RNA expressioni
HPA:26.7TPM
GTEx:45.6RPKM
FANTOM5:80.7Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 26.7
overview Male, age 54 Sample 1
TPM: 13.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 46.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 23.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 40
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 38.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 13.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 37.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 26.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 36.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 40.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 45.6
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 58.0
Samples: 149

Max RPKM: 149.0
Min RPKM: 21.0
Std RPKM: 23.5
Median RPKM: 54.2
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 149.0
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 142.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 134.7
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 130.6
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 127.2
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 121.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 110.4
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 110.4
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 101.8
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 96.3
Show all
Colon - Transverse
RPKM: 36.2
Samples: 196

Max RPKM: 302.8
Min RPKM: 3.5
Std RPKM: 34.4
Median RPKM: 27.8
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 302.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 176.7
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 169.2
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 133.1
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 112.2
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 107.0
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 104.7
GTEX-117YX-0826-SM-5H11J 50-59 years, male 100.8
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 94.1
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 93.0
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 80.7
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 77.1
FF:10014-101C5 62,83,84 years, mixed 80.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.