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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1120.5
Min RPKM: 8.2
Std RPKM: 246.2
Median RPKM: 300.9
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
1120.5
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
857.9
GTEX-13113-1526-SM-5EGHV
60-69 years, female
825.6
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
759.8
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
734.0
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
728.3
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
717.5
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
644.4
GTEX-13O21-1926-SM-5MR39
50-59 years, male
631.7
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
627.3
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
618.2
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
605.6
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
600.7
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
594.8
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
547.7
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
498.8
GTEX-1445S-2926-SM-5O993
60-69 years, male
465.8
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
462.2
GTEX-X261-2426-SM-4PQZU
50-59 years, male
439.9
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
414.9
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
414.7
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
394.4
GTEX-11P82-0926-SM-5986X
20-29 years, male
386.5
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
379.6
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
358.0
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
351.7
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
340.7
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
324.3
GTEX-Y111-2626-SM-4TT24
50-59 years, male
300.9
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
286.8
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
285.7
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
273.4
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
253.3
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
245.8
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
234.9
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
225.7
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
223.3
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
208.3
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
193.2
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
192.4
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
175.1
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
169.2
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
168.2
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
159.4
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
155.7
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
138.0
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
127.6
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
126.6
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
113.2
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
111.0
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
94.6
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
85.2
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
78.2
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
68.0
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
42.5
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
29.9
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
8.2
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.