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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 7.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 0.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 3.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 3.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 5.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 5.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 138.1
Min RPKM: 14.2
Std RPKM: 23.8
Median RPKM: 60.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
138.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
122.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
121.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
119.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
113.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
110.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
102.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
98.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
97.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
96.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
93.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
92.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
92.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
91.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
89.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
88.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
84.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
84.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
82.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
82.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
82.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
81.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
80.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
78.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
78.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
77.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
77.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
77.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
77.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
76.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
76.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
75.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
75.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
74.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
73.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
72.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
71.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
70.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
69.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
69.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
69.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
68.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
66.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
66.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
66.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
66.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
65.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
65.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
64.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
64.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
64.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
63.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
63.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
62.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
61.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
61.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
61.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
61.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
60.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
60.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
60.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
58.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
57.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
57.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
57.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
56.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
56.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
56.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
55.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
55.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
54.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
54.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
54.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
53.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
53.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
52.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
52.0
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
51.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
51.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
50.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
50.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
49.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
49.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
48.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
48.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
47.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
47.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
46.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
43.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
43.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
43.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
42.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
42.1
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
41.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
40.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
40.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
40.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
39.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
39.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
37.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
36.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
36.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
35.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
35.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
34.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
32.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
32.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
31.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
31.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
28.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
28.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
26.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
26.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
26.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
24.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
22.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
21.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
17.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
14.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.