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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1152.6
Min RPKM: 444.7
Std RPKM: 134.6
Median RPKM: 664.1
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
1152.6
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
1053.7
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
1004.9
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
998.4
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
973.0
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
945.5
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
935.3
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
893.8
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
878.4
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
867.7
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
865.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
851.8
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
851.4
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
843.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
832.8
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
832.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
830.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
829.3
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
819.6
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
814.2
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
811.9
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
801.9
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
800.2
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
793.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
782.9
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
775.7
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
771.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
771.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
765.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
763.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
762.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
759.3
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
755.1
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
747.9
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
740.9
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
739.3
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
726.0
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
725.2
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
723.9
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
719.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
718.1
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
703.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
702.1
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
697.5
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
683.7
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
675.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
673.4
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
667.7
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
660.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
660.3
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
654.1
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
652.9
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
652.2
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
649.4
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
645.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
645.3
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
641.9
GTEX-QCQG-1226-SM-48U23
50-59 years, female
641.4
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
637.6
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
637.1
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
637.1
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
637.0
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
628.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
627.9
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
626.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
622.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
616.8
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
616.1
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
614.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
610.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
608.7
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
607.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
601.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
600.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
600.4
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
599.9
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
597.0
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
593.0
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
592.3
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
590.4
GTEX-11I78-2026-SM-5987C
50-59 years, female
582.6
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
580.6
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
574.1
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
554.5
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
551.6
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
549.6
GTEX-S341-1226-SM-4AD5S
40-49 years, female
545.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
544.4
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
538.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
535.0
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
523.4
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
520.5
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
514.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
506.9
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
472.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
444.7
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.