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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 927.5
Min RPKM: 177.8
Std RPKM: 154.0
Median RPKM: 456.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
927.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
838.9
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
765.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
723.9
GTEX-1192X-2526-SM-59868
50-59 years, male
707.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
705.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
701.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
697.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
696.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
693.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
670.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
668.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
665.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
652.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
645.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
644.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
633.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
613.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
590.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
590.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
574.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
572.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
568.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
558.0
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
555.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
551.0
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
548.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
539.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
533.8
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
532.8
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
523.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
518.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
517.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
513.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
501.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
487.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
487.5
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
483.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
481.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
479.4
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
464.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
458.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
457.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
456.8
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
456.0
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
452.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
448.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
436.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
431.0
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
421.3
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
415.9
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
415.6
GTEX-13113-1226-SM-5EGHT
60-69 years, female
415.1
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
405.6
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
405.0
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
404.1
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
391.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
390.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
387.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
386.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
385.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
381.3
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
380.0
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
379.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
372.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
356.8
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
352.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
351.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
350.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
341.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
337.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
317.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
315.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
309.4
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
298.9
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
297.5
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
293.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
293.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
283.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
274.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
268.1
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
254.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
251.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
247.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
232.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
230.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
216.1
GTEX-111YS-1426-SM-5GID8
60-69 years, male
177.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.