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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 987.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 422.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 463.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 687
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 668.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1136.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 704.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 899
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 475.8
Min RPKM: 89.7
Std RPKM: 74.7
Median RPKM: 247.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
475.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
452.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
420.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
419.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
414.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
405.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
404.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
389.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
383.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
380.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
376.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
375.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
373.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
370.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
364.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
354.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
350.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
345.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
345.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
337.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
336.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
334.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
333.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
323.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
320.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
315.9
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
315.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
315.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
313.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
308.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
308.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
303.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
302.9
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
302.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
293.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
291.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
290.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
288.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
286.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
286.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
283.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
272.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
272.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
271.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
268.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
268.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
265.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
263.8
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
263.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
261.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
261.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
260.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
259.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
257.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
254.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
252.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
251.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
251.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
250.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
247.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
247.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
247.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
247.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
242.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
241.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
239.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
239.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
238.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
238.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
237.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
235.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
234.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
229.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
229.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
229.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
225.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
222.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
221.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
221.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
221.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
220.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
219.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
219.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
217.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
216.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
216.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
215.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
213.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
212.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
209.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
208.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
205.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
205.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
203.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
201.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
201.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
200.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
199.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
195.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
194.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
193.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
191.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
187.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
187.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
182.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
178.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
175.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
166.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
165.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
163.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
161.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
159.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
155.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
154.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
152.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
148.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
142.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
119.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
89.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.