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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1315.5
Min RPKM: 37.4
Std RPKM: 257.2
Median RPKM: 433.2
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
1315.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
1120.3
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
988.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
964.8
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
893.2
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
838.8
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
833.6
GTEX-QCQG-1226-SM-48U23
50-59 years, female
822.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
792.0
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
779.3
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
762.5
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
734.3
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
699.7
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
692.1
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
691.3
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
689.9
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
673.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
646.9
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
645.9
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
642.6
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
634.0
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
629.0
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
623.7
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
612.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
607.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
599.1
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
595.6
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
575.4
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
571.9
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
556.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
551.6
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
550.2
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
550.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
530.5
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
504.4
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
494.1
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
491.2
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
482.4
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
475.7
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
469.9
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
463.8
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
457.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
452.4
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
446.8
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
445.9
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
440.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
437.8
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
437.2
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
429.1
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
397.2
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
393.8
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
362.7
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
359.0
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
357.2
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
357.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
356.9
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
352.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
351.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
347.9
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
334.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
324.8
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
317.8
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
302.5
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
301.6
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
294.6
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
285.9
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
278.1
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
272.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
252.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
245.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
229.8
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
211.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
206.7
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
206.6
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
195.8
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
188.9
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
185.4
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
176.2
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
175.2
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
174.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
174.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
173.6
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
172.5
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
151.4
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
140.5
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
138.2
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
119.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
109.7
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
103.3
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
94.3
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
92.6
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
87.1
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
64.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
56.0
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
41.6
GTEX-11I78-2026-SM-5987C
50-59 years, female
37.4
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.