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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 625.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 492.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 414.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 805.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 555.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 478
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 503.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 972.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 335.2
Min RPKM: 2.7
Std RPKM: 61.8
Median RPKM: 108.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
335.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
267.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
258.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
258.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
252.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
243.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
240.6
GTEX-R53T-0326-SM-48FEC
50-59 years, female
228.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
228.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
223.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
212.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
203.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
196.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
195.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
186.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
182.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
182.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
180.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
177.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
176.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
174.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
167.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
165.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
162.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
162.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
157.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
157.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
157.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
153.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
153.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
151.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
145.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
144.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
144.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
141.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
141.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
140.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
140.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
139.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
137.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
130.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
129.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
129.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
128.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
127.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
124.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
119.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
119.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
119.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
117.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
114.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
114.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
114.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
113.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
113.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
111.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
110.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
110.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
109.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
108.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
108.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
107.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
106.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
105.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
103.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
101.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
101.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
97.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
97.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
96.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
95.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
95.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
95.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
92.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
91.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
86.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
86.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
85.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
85.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
84.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
84.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
84.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
81.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
79.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
78.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
78.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
78.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
76.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
74.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
73.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
69.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
69.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
69.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
68.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
66.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
66.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
63.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
58.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
58.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
58.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
57.9
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
56.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
51.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
50.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
49.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
49.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
48.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
46.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
45.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
43.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
41.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
37.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
37.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
30.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
26.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
14.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
12.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
5.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
2.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.