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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1211.4
Min RPKM: 0.2
Std RPKM: 248.1
Median RPKM: 229.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
1211.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
856.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
817.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
753.8
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
731.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
700.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
699.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
644.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
606.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
599.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
594.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
580.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
556.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
534.0
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
529.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
528.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
524.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
515.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
515.4
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
488.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
461.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
453.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
452.1
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
452.0
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
448.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
426.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
425.4
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
419.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
392.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
377.6
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
371.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
344.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
343.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
303.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
300.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
299.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
296.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
295.3
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
285.6
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
278.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
254.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
251.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
244.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
233.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
225.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
223.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
220.2
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
214.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
211.7
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
211.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
204.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
194.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
183.3
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
178.6
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
173.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
155.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
143.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
142.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
138.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
129.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
114.3
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
109.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
96.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
96.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
81.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
68.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
54.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
31.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
28.8
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
28.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
28.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
27.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
27.2
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
26.3
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
24.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
22.4
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
21.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
20.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
18.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
12.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
8.3
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
5.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
2.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
2.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
2.1
GTEX-1192X-2526-SM-59868
50-59 years, male
1.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
1.3
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
0.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.