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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 655.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 160.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 200.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 533.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 396.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 276.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 39.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 287.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 908.7
Min RPKM: 10.9
Std RPKM: 184.6
Median RPKM: 71.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
908.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
845.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
803.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
782.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
665.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
589.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
577.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
575.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
569.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
503.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
446.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
364.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
283.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
279.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
275.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
240.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
222.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
202.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
199.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
198.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
188.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
178.7
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
165.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
161.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
160.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
153.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
150.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
144.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
141.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
120.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
117.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
109.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
109.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
106.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
106.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
105.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
100.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
99.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
98.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
96.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
96.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
91.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
89.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
88.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
86.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
85.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
82.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
82.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
81.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
81.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
81.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
80.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
80.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
79.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
77.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
75.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
75.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
74.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
73.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
71.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
70.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
68.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
67.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
66.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
66.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
65.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
65.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
64.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
64.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
63.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
56.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
56.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
55.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
55.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
54.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
52.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
52.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
50.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
50.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
49.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
49.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
49.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
47.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
46.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
46.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
43.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
42.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
38.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
38.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
38.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
37.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
36.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
29.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
29.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
28.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
28.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
28.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
28.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
27.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
26.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
26.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
25.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
23.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
22.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
22.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
22.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
21.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
20.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
19.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
18.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
15.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
15.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
15.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
15.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
14.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
12.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
12.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
12.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
10.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.