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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 480.0
Min RPKM: 66.4
Std RPKM: 80.0
Median RPKM: 201.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
480.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
435.5
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
381.7
GTEX-1192X-2526-SM-59868
50-59 years, male
365.4
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
350.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
345.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
341.2
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
330.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
330.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
320.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
316.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
303.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
288.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
287.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
287.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
286.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
284.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
276.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
271.2
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
269.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
259.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
257.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
256.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
247.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
246.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
245.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
241.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
239.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
238.3
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
237.7
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
237.4
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
234.2
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
230.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
224.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
220.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
219.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
218.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
217.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
216.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
213.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
211.2
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
205.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
205.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
203.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
199.5
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
198.4
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
198.0
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
192.0
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
191.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
191.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
181.9
GTEX-13113-1226-SM-5EGHT
60-69 years, female
177.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
177.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
174.5
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
173.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
169.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
168.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
163.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
162.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
161.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
159.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
158.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
157.7
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
151.7
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
151.0
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
150.9
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
147.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
147.3
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
145.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
145.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
143.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
140.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
137.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
135.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
135.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
134.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
132.0
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
128.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
125.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
122.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
119.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
119.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
111.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
108.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
93.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
87.8
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
84.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
66.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.