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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 7545.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 12648.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 9112
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 10972.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 11267.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 7146.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 8586
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 9652.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 5452.2
Min RPKM: 274.5
Std RPKM: 881.1
Median RPKM: 1711.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
5452.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
4145.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
4040.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
3909.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
3586.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
3571.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
3343.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
3245.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
3234.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
3212.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
3115.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
3042.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
3028.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
3011.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
2933.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
2891.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
2874.0
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
2832.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
2799.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
2798.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
2789.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
2779.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
2714.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
2657.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
2644.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
2618.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
2615.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
2610.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
2554.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
2549.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
2539.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
2522.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
2481.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
2330.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
2320.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
2315.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
2290.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
2274.2
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
2273.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
2203.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
2176.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
2147.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
2119.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
2036.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1986.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
1970.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1961.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1942.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1921.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1916.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
1900.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
1872.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1865.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
1864.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1860.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
1794.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1768.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
1743.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
1718.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
1711.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1705.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1695.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1643.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1641.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
1630.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
1628.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
1525.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
1509.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
1499.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1490.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
1488.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1487.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
1486.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1483.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1483.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1464.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
1430.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1419.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
1409.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
1408.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
1358.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1346.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
1314.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1307.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
1306.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
1272.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1268.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
1261.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
1256.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
1244.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
1198.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
1195.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
1182.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
1175.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1130.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
1129.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1115.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
1110.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1077.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1072.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
1068.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
1065.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
1031.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1017.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
1011.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
1001.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
957.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
948.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
929.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
901.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
870.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
842.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
831.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
825.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
807.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
726.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
617.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
500.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
274.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.