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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 5863.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 5690.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 4556.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 8995.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 6281.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 3336.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 5053
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 6449.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3552.4
Min RPKM: 166.9
Std RPKM: 644.5
Median RPKM: 908.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
3552.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
3114.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
2981.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
2530.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
2418.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
2314.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
2211.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
2103.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
2092.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
2090.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
2075.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
2063.0
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
2028.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1995.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1900.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1840.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1818.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1738.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
1691.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
1589.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1568.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1521.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
1474.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
1451.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1440.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1424.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1417.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1395.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
1381.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
1321.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1298.2
GTEX-P78B-1326-SM-3P611
40-49 years, female
1238.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
1235.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1232.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1210.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1198.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
1179.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
1115.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
1087.2
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1062.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
1053.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1052.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
1047.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1046.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1035.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
1014.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1002.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
994.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
985.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
985.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
970.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
966.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
959.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
940.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
935.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
932.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
920.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
916.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
910.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
908.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
883.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
870.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
831.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
824.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
822.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
818.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
818.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
777.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
771.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
771.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
763.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
761.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
699.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
696.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
687.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
685.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
684.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
665.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
664.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
658.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
650.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
650.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
628.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
625.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
623.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
612.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
603.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
600.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
597.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
589.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
587.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
570.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
553.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
544.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
543.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
538.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
523.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
503.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
501.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
500.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
490.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
431.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
409.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
402.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
395.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
386.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
376.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
374.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
370.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
363.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
345.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
344.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
337.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
294.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
281.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
269.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
249.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
230.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
166.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.