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COLON - Expression summary
RNA expressioni
HPA:4.3TPM
GTEx:8.4RPKM
FANTOM5:7.8Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 4.3
overview Male, age 54 Sample 1
TPM: 0.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 32.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 8.4
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 13.8
Samples: 149

Max RPKM: 52.9
Min RPKM: 1.2
Std RPKM: 9.1
Median RPKM: 12.9
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 52.9
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 49.8
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 40.3
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 37.5
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 36.0
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 35.8
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 34.7
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 31.9
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 31.8
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 28.3
Show all
Colon - Transverse
RPKM: 4.2
Samples: 196

Max RPKM: 25.2
Min RPKM: 0.0
Std RPKM: 5.3
Median RPKM: 2.1
GTEX-13VXT-2426-SM-5LU46 20-29 years, female 25.2
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 22.6
GTEX-SNMC-1126-SM-4DM5M 20-29 years, male 20.6
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 19.4
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 19.2
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 17.4
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 17.3
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 17.0
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 16.8
GTEX-S341-1426-SM-4AD6U 40-49 years, female 16.4
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 7.8
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 5.4
FF:10014-101C5 62,83,84 years, mixed 7.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.