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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 869.2
Min RPKM: 4.0
Std RPKM: 137.7
Median RPKM: 135.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
869.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
438.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
423.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
389.4
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
384.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
379.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
368.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
358.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
342.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
330.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
325.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
312.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
294.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
293.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
287.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
282.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
269.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
263.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
261.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
256.3
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
254.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
229.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
226.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
223.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
223.3
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
205.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
204.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
202.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
200.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
199.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
189.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
188.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
186.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
180.8
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
170.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
155.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
153.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
148.4
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
144.6
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
141.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
139.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
138.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
137.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
136.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
134.2
GTEX-13113-1226-SM-5EGHT
60-69 years, female
131.9
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
131.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
130.0
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
127.9
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
119.1
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
118.1
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
116.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
106.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
105.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
101.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
94.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
84.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
83.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
81.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
70.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
68.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
65.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
61.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
57.5
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
54.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
50.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
49.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
47.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
46.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
46.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
44.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
37.1
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
36.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
34.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
34.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
27.7
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
19.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
17.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
17.4
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
14.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
12.4
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
9.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
8.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
7.7
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
5.5
GTEX-1192X-2526-SM-59868
50-59 years, male
4.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
4.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
4.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.