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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 332.1
Min RPKM: 72.6
Std RPKM: 53.9
Median RPKM: 166.4
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
332.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
330.9
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
279.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
266.7
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
266.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
265.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
263.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
263.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
259.1
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
253.2
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
240.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
239.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
231.8
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
231.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
226.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
222.8
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
220.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
218.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
212.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
212.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
211.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
209.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
205.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
199.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
199.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
197.1
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
196.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
194.7
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
188.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
180.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
179.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
178.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
177.8
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
176.2
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
175.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
174.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
174.0
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
174.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
172.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
168.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
168.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
167.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
166.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
166.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
166.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
165.4
GTEX-117YX-0326-SM-5GICL
50-59 years, male
163.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
162.2
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
160.0
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
159.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
156.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
156.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
153.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
153.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
147.0
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
147.0
GTEX-1192X-2526-SM-59868
50-59 years, male
145.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
145.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
145.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
144.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
142.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
142.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
136.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
132.6
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
132.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
131.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
131.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
129.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
129.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
128.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
128.3
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
126.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
124.0
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
120.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
119.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
115.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
114.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
113.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
111.7
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
111.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
109.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
109.3
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
108.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
108.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
89.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
82.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
80.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
72.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.