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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 477.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 386
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 349.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 621.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 498
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 761.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 540.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 846
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 535.8
Min RPKM: 92.3
Std RPKM: 87.2
Median RPKM: 248.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
535.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
535.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
531.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
482.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
467.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
465.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
445.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
422.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
419.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
404.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
395.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
382.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
377.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
370.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
367.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
367.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
361.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
358.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
348.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
347.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
342.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
338.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
338.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
337.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
336.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
332.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
330.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
319.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
317.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
311.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
306.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
304.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
300.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
296.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
295.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
294.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
294.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
285.9
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
283.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
274.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
273.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
271.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
269.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
268.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
265.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
265.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
261.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
260.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
260.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
259.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
258.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
258.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
257.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
256.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
255.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
254.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
253.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
252.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
249.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
248.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
245.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
244.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
243.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
240.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
240.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
239.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
239.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
237.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
237.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
237.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
234.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
233.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
231.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
229.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
226.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
225.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
223.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
223.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
222.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
221.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
220.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
220.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
216.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
215.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
214.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
212.6
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
211.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
210.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
210.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
208.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
207.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
206.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
205.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
203.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
201.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
200.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
197.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
194.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
190.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
190.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
190.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
190.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
189.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
186.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
184.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
181.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
178.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
178.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
177.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
176.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
172.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
167.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
154.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
153.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
151.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
147.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
137.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
102.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
92.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.