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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 271.5
Min RPKM: 42.1
Std RPKM: 49.2
Median RPKM: 139.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
271.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
258.8
GTEX-1192X-2526-SM-59868
50-59 years, male
252.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
245.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
226.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
226.2
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
222.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
210.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
207.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
199.8
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
196.2
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
196.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
194.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
194.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
193.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
192.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
190.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
187.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
186.6
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
182.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
182.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
178.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
178.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
177.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
176.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
172.4
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
169.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
168.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
166.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
165.7
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
164.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
162.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
162.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
161.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
158.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
157.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
157.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
155.2
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
151.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
151.4
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
151.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
148.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
141.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
139.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
139.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
135.1
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
134.2
GTEX-13113-1226-SM-5EGHT
60-69 years, female
133.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
132.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
130.7
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
129.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
129.2
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
127.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
127.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
127.6
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
126.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
122.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
119.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
119.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
118.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
116.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
114.6
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
114.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
112.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
111.6
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
106.0
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
105.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
104.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
103.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
102.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
100.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
97.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
95.5
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
94.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
92.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
92.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
89.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
87.3
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
83.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
83.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
78.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
69.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
67.5
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
67.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
66.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
62.0
GTEX-ZTSS-0926-SM-59865
40-49 years, male
60.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
42.1
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.