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COLON - Expression summary
RNA expressioni
HPA:11.3TPM
GTEx:16.1RPKM
FANTOM5:95.0Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 11.3
overview Male, age 54 Sample 1
TPM: 9.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 7.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 6.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 25.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 18.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 9.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 12.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 19.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 16.1
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 24.7
Samples: 149

Max RPKM: 51.0
Min RPKM: 3.6
Std RPKM: 8.7
Median RPKM: 24.9
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 51.0
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 46.4
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 45.7
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 43.2
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 39.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 38.5
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 38.4
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 38.3
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 38.0
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 38.0
Show all
Colon - Transverse
RPKM: 9.5
Samples: 196

Max RPKM: 43.2
Min RPKM: 1.3
Std RPKM: 8.0
Median RPKM: 6.2
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 43.2
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 40.3
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 35.7
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 31.2
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 29.1
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 28.5
GTEX-S341-1426-SM-4AD6U 40-49 years, female 28.4
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 27.9
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 26.1
GTEX-Y114-1526-SM-4TT79 50-59 years, female 26.0
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 95.0
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 77.1
FF:10014-101C5 62,83,84 years, mixed 95.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.