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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 695.3
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 684.4
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 2908
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 398.4
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 590
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 1144
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 293
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 863.8
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 299.1
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1711.7
Min RPKM: 107.3
Std RPKM: 196.7
Median RPKM: 269.6
GTEX-P4QR-0226-SM-3NMCH
60-69 years, male
1711.7
GTEX-12WSM-1326-SM-5GCP9
60-69 years, male
1268.5
GTEX-145LT-0426-SM-5LUAP
40-49 years, male
1108.0
GTEX-1399R-1626-SM-5P9GG
30-39 years, male
1050.3
GTEX-1399Q-2826-SM-5IJEZ
40-49 years, male
841.2
GTEX-13OW6-0126-SM-5IJGM
50-59 years, male
734.4
GTEX-VJYA-1426-SM-4KL1Y
60-69 years, male
658.2
GTEX-V955-1926-SM-4KL1L
60-69 years, male
622.9
GTEX-OOBJ-2126-SM-3NB1N
60-69 years, male
613.4
GTEX-NFK9-0126-SM-3LK5H
40-49 years, male
585.5
GTEX-R55D-0126-SM-48FEL
50-59 years, male
570.4
GTEX-Y9LG-1726-SM-4VBQE
30-39 years, male
567.2
GTEX-OIZH-2126-SM-3NB1P
50-59 years, male
566.1
GTEX-QEG5-0126-SM-4R1JR
20-29 years, male
510.1
GTEX-YB5E-1926-SM-5IFIG
40-49 years, male
486.7
GTEX-YJ89-0626-SM-4TT3Z
60-69 years, male
478.5
GTEX-U8T8-1126-SM-4DXUE
60-69 years, male
477.7
GTEX-YFCO-1726-SM-4W21S
40-49 years, male
472.8
GTEX-QLQ7-1426-SM-4R1JX
60-69 years, male
469.2
GTEX-QV44-1726-SM-4R1KG
50-59 years, male
461.4
GTEX-WH7G-1926-SM-4LVMM
40-49 years, male
457.9
GTEX-ZDTT-2026-SM-5K7TY
60-69 years, male
452.8
GTEX-XPVG-2226-SM-4B65U
50-59 years, male
452.5
GTEX-PLZ5-1526-SM-3P5ZX
50-59 years, male
438.9
GTEX-147F4-0626-SM-5LUAK
50-59 years, male
430.5
GTEX-11P7K-1026-SM-5HL6Y
30-39 years, male
429.4
GTEX-ZAB4-0126-SM-5CVMG
40-49 years, male
427.5
GTEX-11TT1-2226-SM-5GU6B
20-29 years, male
425.4
GTEX-14A6H-2326-SM-5Q5B5
30-39 years, male
422.0
GTEX-13N2G-0126-SM-5N9DV
60-69 years, male
416.0
GTEX-ZVZP-2226-SM-57WBF
50-59 years, male
414.1
GTEX-Y8E4-2226-SM-5LU94
40-49 years, male
406.8
GTEX-11ONC-2226-SM-5HL6D
60-69 years, male
400.7
GTEX-13NYB-2226-SM-5MR58
40-49 years, male
397.0
GTEX-131XE-0426-SM-5IJF4
50-59 years, male
396.6
GTEX-X261-2326-SM-4PQYU
50-59 years, male
377.7
GTEX-QLQW-1026-SM-447A9
30-39 years, male
377.6
GTEX-X3Y1-2626-SM-4PQZI
40-49 years, male
371.8
GTEX-SUCS-1326-SM-4DM5T
70-79 years, male
368.9
GTEX-13O1R-0726-SM-5IJEI
60-69 years, male
367.2
GTEX-S33H-0126-SM-4AD62
30-39 years, male
364.8
GTEX-PW2O-1426-SM-48TCD
20-29 years, male
364.1
GTEX-144GN-1626-SM-5Q5BU
50-59 years, male
361.4
GTEX-145MO-0126-SM-5S2QU
60-69 years, male
357.5
GTEX-T8EM-0126-SM-4DM5R
40-49 years, male
356.8
GTEX-YEC4-1526-SM-4W1YU
40-49 years, male
349.8
GTEX-QMRM-1526-SM-4R1K6
50-59 years, male
349.0
GTEX-OIZI-0126-SM-3NB13
40-49 years, male
348.7
GTEX-YF7O-2026-SM-4W1YE
50-59 years, male
348.5
GTEX-XLM4-1526-SM-4AT6D
60-69 years, male
346.8
GTEX-T5JC-0726-SM-4DM55
20-29 years, male
346.2
GTEX-ZYFC-0126-SM-5GIEH
50-59 years, male
342.7
GTEX-U3ZH-1526-SM-4DXV1
30-39 years, male
342.0
GTEX-ZT9X-1426-SM-5DUX1
40-49 years, male
341.2
GTEX-13O61-2026-SM-5J2M6
60-69 years, male
337.4
GTEX-1339X-1926-SM-5PNVP
40-49 years, male
333.8
GTEX-ZQUD-2026-SM-51MSM
30-39 years, male
330.4
GTEX-WVLH-2626-SM-4MVNV
50-59 years, male
328.4
GTEX-147JS-0126-SM-5S2TW
60-69 years, male
326.4
GTEX-XBED-2026-SM-4AT5D
60-69 years, male
325.2
GTEX-ZA64-1626-SM-5CVME
20-29 years, male
321.1
GTEX-XPT6-1626-SM-4B655
20-29 years, male
317.3
GTEX-Q2AH-1526-SM-48TZG
40-49 years, male
317.1
GTEX-11EQ8-1426-SM-5EGJR
60-69 years, male
316.3
GTEX-132QS-1226-SM-5P9GD
60-69 years, male
314.8
GTEX-RUSQ-2126-SM-47JXK
50-59 years, male
313.7
GTEX-S95S-1126-SM-4B64E
60-69 years, male
313.7
GTEX-11EI6-2226-SM-5EGJM
60-69 years, male
305.9
GTEX-S4Q7-1226-SM-4AD5I
20-29 years, male
301.7
GTEX-13FTW-1326-SM-5LZZD
40-49 years, male
300.1
GTEX-P4QS-2126-SM-3NMCF
60-69 years, male
300.0
GTEX-S7SE-0326-SM-4AT5Q
50-59 years, male
298.3
GTEX-R55C-1426-SM-48FED
40-49 years, male
295.5
GTEX-13N1W-2626-SM-5IJEP
70-79 years, male
290.6
GTEX-WFON-2026-SM-4LVMW
40-49 years, male
289.9
GTEX-V1D1-2126-SM-4JBH4
50-59 years, male
289.0
GTEX-13OVH-0726-SM-5N9BU
70-79 years, male
283.4
GTEX-ZAB5-2426-SM-5CVMW
50-59 years, male
280.7
GTEX-U4B1-1526-SM-4DXSL
40-49 years, male
277.7
GTEX-S3XE-1526-SM-4AD5A
50-59 years, male
276.4
GTEX-11WQK-2826-SM-5EQKH
50-59 years, male
276.2
GTEX-12WSI-2126-SM-5GCMV
50-59 years, male
275.6
GTEX-TKQ1-0926-SM-4DXU2
30-39 years, male
275.3
GTEX-14753-0626-SM-5Q5CY
60-69 years, male
271.0
GTEX-UPJH-0126-SM-4IHLL
50-59 years, male
271.0
GTEX-U8XE-0126-SM-4E3I3
30-39 years, male
269.7
GTEX-11O72-0726-SM-5P9GO
40-49 years, male
269.5
GTEX-13111-1526-SM-5EGJX
50-59 years, male
268.3
GTEX-12WSL-2326-SM-5DUXQ
50-59 years, male
266.3
GTEX-RM2N-1326-SM-48FCW
50-59 years, male
266.2
GTEX-XQ3S-2726-SM-4BOP2
20-29 years, male
262.3
GTEX-RN64-2326-SM-48FDW
50-59 years, male
260.3
GTEX-139TT-2226-SM-5LZWO
60-69 years, male
258.1
GTEX-OHPM-2126-SM-3LK75
50-59 years, male
256.8
GTEX-139TS-1726-SM-5IJG5
60-69 years, male
256.2
GTEX-WFG8-1926-SM-4LVM1
20-29 years, male
255.6
GTEX-ZV7C-2026-SM-5NQ8F
50-59 years, male
254.3
GTEX-13NZB-2026-SM-5MR4M
30-39 years, male
253.2
GTEX-144GL-0726-SM-5LU4P
50-59 years, male
252.9
GTEX-11GS4-2026-SM-5N9CP
60-69 years, male
252.7
GTEX-XMK1-2026-SM-4B65K
40-49 years, male
250.6
GTEX-144GM-0426-SM-5Q5C8
20-29 years, male
249.3
GTEX-ZPU1-2126-SM-57WED
40-49 years, male
248.7
GTEX-XGQ4-2026-SM-4AT6G
50-59 years, male
248.3
GTEX-13NZA-2526-SM-5IJFX
60-69 years, male
244.3
GTEX-11NSD-1026-SM-5N9BE
20-29 years, male
244.2
GTEX-ZT9W-2226-SM-57WFU
50-59 years, male
244.1
GTEX-QV31-1126-SM-4R1K4
30-39 years, male
239.8
GTEX-11EQ9-1926-SM-5PNVV
30-39 years, male
234.7
GTEX-111CU-1726-SM-5EGHM
50-59 years, male
225.9
GTEX-111FC-1926-SM-5GZYC
60-69 years, male
225.7
GTEX-1212Z-0326-SM-5FQSJ
60-69 years, male
225.5
GTEX-13O21-1226-SM-5J2MK
50-59 years, male
219.9
GTEX-ZVTK-0126-SM-57WDG
20-29 years, male
219.3
GTEX-11OF3-1826-SM-5987N
60-69 years, male
218.5
GTEX-WHSB-2126-SM-4M1XF
50-59 years, male
218.4
GTEX-ZDYS-1326-SM-5IJFF
50-59 years, male
217.4
GTEX-O5YT-2126-SM-3MJGD
20-29 years, male
216.9
GTEX-13VXU-0726-SM-5J2O7
50-59 years, male
212.3
GTEX-U3ZM-1626-SM-4DXSK
40-49 years, male
211.5
GTEX-REY6-0126-SM-48FDT
60-69 years, male
210.4
GTEX-11WQC-2326-SM-5EQKE
60-69 years, male
208.0
GTEX-ZZ64-1126-SM-5GZXY
20-29 years, male
205.2
GTEX-117XS-2026-SM-5GID1
60-69 years, male
204.6
GTEX-13112-0226-SM-5P9IV
50-59 years, male
203.4
GTEX-OXRL-2126-SM-3NM98
50-59 years, male
202.5
GTEX-11TUW-2226-SM-5EQL9
60-69 years, male
201.4
GTEX-12696-0226-SM-5EGL3
60-69 years, male
200.8
GTEX-WOFM-1126-SM-4OOSB
20-29 years, male
200.7
GTEX-139T6-1226-SM-5IFFC
50-59 years, male
200.5
GTEX-12WSH-0326-SM-5GCNH
50-59 years, male
200.3
GTEX-R55E-0726-SM-48FCZ
20-29 years, male
199.8
GTEX-14ABY-0626-SM-5Q5C9
50-59 years, male
198.2
GTEX-111VG-1926-SM-5GIDO
60-69 years, male
195.8
GTEX-12ZZY-0126-SM-5LZV2
60-69 years, male
195.7
GTEX-QEG4-0126-SM-48TZE
30-39 years, male
195.4
GTEX-Y5V6-1726-SM-4VDSZ
60-69 years, male
194.7
GTEX-12C56-1426-SM-5FQSW
20-29 years, male
192.4
GTEX-SNMC-1026-SM-4DM7K
20-29 years, male
191.9
GTEX-OOBK-2126-SM-3LK5T
40-49 years, male
190.5
GTEX-S7PM-0626-SM-4AD4Q
60-69 years, male
190.0
GTEX-RWSA-2426-SM-47JXR
40-49 years, male
184.7
GTEX-11LCK-2326-SM-5HL53
30-39 years, male
183.9
GTEX-TKQ2-1526-SM-4DXUN
50-59 years, male
183.2
GTEX-XBEC-0126-SM-4GIDT
50-59 years, male
182.8
GTEX-Z93S-1726-SM-5HL8G
50-59 years, male
182.8
GTEX-145MH-2326-SM-5O9AW
50-59 years, male
182.2
GTEX-11DXZ-2126-SM-59881
50-59 years, male
182.1
GTEX-ZTSS-1526-SM-51MTC
40-49 years, male
181.3
GTEX-ZTX8-1126-SM-51MRM
20-29 years, male
180.7
GTEX-ZUA1-2726-SM-59HLJ
40-49 years, male
179.7
GTEX-N7MS-0126-SM-3TW8O
60-69 years, male
178.3
GTEX-Q2AI-1226-SM-48U14
40-49 years, male
175.0
GTEX-X5EB-2026-SM-4E3KA
40-49 years, male
174.8
GTEX-11NUK-2626-SM-5A5MB
50-59 years, male
171.6
GTEX-13OW5-2526-SM-5L3I1
60-69 years, male
171.0
GTEX-11P82-1526-SM-5BC5M
20-29 years, male
168.3
GTEX-117YW-1526-SM-5EGGP
50-59 years, male
167.8
GTEX-111YS-2026-SM-5EGGL
60-69 years, male
164.3
GTEX-11NV4-1726-SM-5N9FC
60-69 years, male
163.6
GTEX-13FLW-2126-SM-5N9FD
50-59 years, male
157.1
GTEX-ZYT6-2726-SM-5GICP
30-39 years, male
156.5
GTEX-SNOS-1126-SM-4DM67
40-49 years, male
156.3
GTEX-13FHP-2826-SM-5IJFW
50-59 years, male
155.3
GTEX-13OVL-0426-SM-5IFG6
50-59 years, male
154.7
GTEX-WK11-0326-SM-4OOS6
50-59 years, male
152.8
GTEX-XAJ8-1326-SM-47JYT
40-49 years, male
151.7
GTEX-T6MN-2026-SM-4DM7L
50-59 years, male
148.1
GTEX-Y111-2426-SM-4TT23
50-59 years, male
145.5
GTEX-WZTO-0326-SM-4PQYZ
40-49 years, male
138.4
GTEX-YEC3-1726-SM-5IFIK
50-59 years, male
137.1
GTEX-11ZUS-2726-SM-5FQUA
30-39 years, male
107.3
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.