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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3725.0
Min RPKM: 984.8
Std RPKM: 484.3
Median RPKM: 1745.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
3725.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
3157.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
3002.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
2994.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
2933.8
GTEX-1192X-2526-SM-59868
50-59 years, male
2704.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
2663.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
2521.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
2377.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
2363.6
GTEX-13O61-1326-SM-5KM31
60-69 years, male
2294.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
2290.9
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
2212.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
2205.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
2179.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
2174.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
2168.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
2162.2
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
2154.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
2117.8
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
2097.7
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
2094.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
1995.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
1994.0
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
1992.3
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
1980.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
1962.4
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
1960.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
1951.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
1925.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
1908.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
1900.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
1851.9
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
1843.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
1843.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
1826.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
1799.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
1795.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
1789.1
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
1775.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
1759.1
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
1757.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
1750.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
1748.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
1742.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
1738.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
1733.6
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
1733.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
1722.5
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
1712.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
1712.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
1708.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
1700.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
1677.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
1673.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
1662.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
1657.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
1634.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
1610.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
1608.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
1603.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
1599.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
1591.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
1571.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
1568.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
1558.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
1546.0
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
1521.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
1429.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
1428.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
1427.9
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
1416.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
1409.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
1399.9
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
1391.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
1373.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
1348.7
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
1333.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
1318.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
1298.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
1282.7
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
1246.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
1227.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
1211.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
1193.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
1061.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
1003.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
984.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.