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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 5749.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2752.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 3809.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 6759.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 5581.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 7539.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 4794
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 7588.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 12427.2
Min RPKM: 1925.7
Std RPKM: 1888.4
Median RPKM: 4067.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
12427.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
12120.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
10595.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
8915.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
8695.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
8289.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
8038.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
7907.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
7658.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
7648.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
7549.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
7246.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
7128.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
7118.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
6948.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
6927.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
6225.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
6145.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
6075.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
5805.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
5609.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
5596.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
5519.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
5423.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
5366.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
5339.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
5281.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
5255.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
5238.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
5196.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
5129.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
5105.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
5093.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
5062.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
5025.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
4965.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
4936.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
4875.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
4864.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
4726.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
4712.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
4646.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
4607.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
4540.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
4498.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
4491.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
4490.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
4478.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
4474.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
4456.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
4393.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
4390.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
4357.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
4344.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
4344.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
4242.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
4211.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
4195.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
4169.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
4067.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
4024.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
4002.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
3999.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
3974.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
3924.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
3904.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
3891.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
3886.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
3882.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
3862.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
3853.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
3835.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
3828.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
3817.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
3794.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
3745.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
3742.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
3741.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
3708.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
3658.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
3650.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
3627.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
3620.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
3579.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
3553.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
3536.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
3492.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
3458.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
3455.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
3407.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
3391.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
3370.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
3368.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
3364.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
3316.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
3228.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
3195.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
3159.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
3057.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
2926.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
2913.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
2895.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
2874.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
2845.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
2792.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
2750.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
2712.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
2705.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
2681.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
2673.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
2666.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
2511.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
2502.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
2412.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
2336.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
2227.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
2076.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1952.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
1925.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.