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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 705.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 728.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 469.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 601.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 493.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 342.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 581.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 927.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 562.5
Min RPKM: 55.3
Std RPKM: 84.8
Median RPKM: 184.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
562.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
474.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
428.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
399.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
384.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
382.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
346.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
341.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
341.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
337.9
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
337.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
337.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
334.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
325.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
325.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
323.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
311.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
308.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
301.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
295.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
292.7
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
288.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
278.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
266.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
251.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
250.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
249.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
244.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
243.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
242.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
240.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
240.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
240.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
230.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
228.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
228.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
226.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
225.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
224.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
223.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
217.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
214.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
211.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
210.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
208.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
203.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
202.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
202.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
199.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
199.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
198.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
196.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
196.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
191.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
191.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
189.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
188.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
186.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
184.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
184.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
182.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
179.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
179.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
176.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
175.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
174.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
171.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
171.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
168.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
167.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
167.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
166.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
164.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
164.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
163.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
161.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
160.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
160.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
159.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
159.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
157.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
155.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
153.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
151.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
150.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
149.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
147.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
146.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
144.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
143.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
143.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
141.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
138.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
138.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
137.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
136.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
135.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
135.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
135.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
133.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
131.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
130.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
130.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
129.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
129.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
123.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
123.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
123.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
122.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
121.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
120.4
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
119.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
118.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
115.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
115.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
114.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
107.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
106.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
55.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.