We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 382.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 136.6
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 165.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 299.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 257.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 528.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 408.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 346.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 372.6
Min RPKM: 18.0
Std RPKM: 71.3
Median RPKM: 163.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
372.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
347.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
302.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
285.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
283.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
272.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
267.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
261.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
257.9
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
255.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
253.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
237.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
228.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
223.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
222.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
215.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
215.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
212.9
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
209.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
207.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
207.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
203.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
202.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
201.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
201.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
201.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
198.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
198.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
197.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
192.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
191.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
190.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
186.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
186.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
184.5
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
184.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
182.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
182.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
179.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
179.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
178.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
177.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
177.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
174.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
173.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
172.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
172.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
171.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
171.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
170.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
170.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
169.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
169.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
169.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
168.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
167.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
165.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
165.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
163.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
163.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
161.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
160.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
154.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
154.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
151.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
148.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
144.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
144.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
141.9
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
141.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
131.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
130.9
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
125.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
121.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
118.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
114.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
114.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
110.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
108.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
107.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
107.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
105.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
102.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
102.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
102.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
100.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
96.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
92.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
89.2
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
88.1
GTEX-Q734-0326-SM-48U15
40-49 years, female
87.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
87.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
86.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
84.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
84.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
82.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
82.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
79.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
78.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
75.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
75.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
72.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
63.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
61.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
58.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
55.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
51.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
50.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
49.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
44.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
40.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
38.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
37.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
35.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
34.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
34.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
33.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
21.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
18.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.