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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 435.9
Min RPKM: 0.1
Std RPKM: 120.1
Median RPKM: 104.8
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
435.9
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
410.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
397.0
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
387.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
375.1
GTEX-S341-1226-SM-4AD5S
40-49 years, female
359.3
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
343.1
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
327.2
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
303.4
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
288.0
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
283.2
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
281.2
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
275.0
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
263.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
260.9
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
258.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
253.9
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
253.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
251.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
247.1
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
240.2
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
237.6
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
236.1
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
227.3
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
211.8
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
211.3
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
208.0
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
200.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
195.0
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
194.0
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
181.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
179.9
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
171.8
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
168.4
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
162.2
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
160.1
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
159.8
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
154.0
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
149.6
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
147.2
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
143.4
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
141.0
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
139.8
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
136.5
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
127.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
117.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
112.0
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
110.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
99.1
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
98.8
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
89.1
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
86.2
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
84.5
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
81.4
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
76.3
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
73.7
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
71.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
60.9
GTEX-QCQG-1226-SM-48U23
50-59 years, female
58.2
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
56.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
49.4
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
45.2
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
40.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
34.1
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
33.7
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
33.1
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
28.8
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
23.2
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
17.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
17.9
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
14.6
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
12.4
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
6.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
6.3
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
3.7
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
3.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
1.5
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
1.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
0.8
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
0.7
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
0.7
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
0.6
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
0.5
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
0.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
0.4
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
0.3
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
0.3
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
0.3
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
0.3
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
0.3
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
0.3
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
0.2
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
0.2
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
0.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
0.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
0.1
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.