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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 206.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 726.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 379.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 574.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 602.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 387.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 514.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 663.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 378.0
Min RPKM: 35.6
Std RPKM: 71.2
Median RPKM: 194.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
378.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
367.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
358.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
349.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
343.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
339.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
331.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
327.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
313.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
307.7
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
304.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
293.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
293.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
292.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
291.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
285.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
283.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
283.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
273.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
270.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
269.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
267.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
254.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
253.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
253.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
253.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
253.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
251.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
249.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
249.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
247.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
246.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
245.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
238.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
237.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
236.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
235.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
235.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
228.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
228.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
227.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
225.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
223.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
220.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
218.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
216.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
214.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
212.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
209.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
206.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
206.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
205.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
204.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
202.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
201.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
200.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
200.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
197.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
196.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
194.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
191.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
189.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
184.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
183.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
181.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
181.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
180.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
179.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
176.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
176.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
171.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
170.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
169.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
168.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
168.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
165.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
162.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
162.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
160.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
160.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
160.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
158.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
157.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
157.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
157.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
156.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
155.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
155.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
153.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
152.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
151.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
148.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
144.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
144.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
141.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
141.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
140.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
137.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
135.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
134.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
129.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
121.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
120.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
117.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
114.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
111.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
108.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
107.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
106.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
104.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
100.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
98.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
96.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
95.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
93.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
89.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
72.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
53.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
35.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.