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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3.1
Min RPKM: 0.6
Std RPKM: 0.8
Median RPKM: 1.9
GTEX-TSE9-2826-SM-4DXTF
60-69 years, female
3.1
GTEX-S32W-1526-SM-4AD6Z
50-59 years, female
2.8
GTEX-S341-1126-SM-4AD6T
40-49 years, female
1.9
GTEX-S4UY-1426-SM-4AD6Y
40-49 years, female
1.9
GTEX-T5JW-0726-SM-4DM6D
20-29 years, female
1.2
GTEX-U3ZN-1626-SM-4DXTZ
30-39 years, female
0.6
Cervix - Endocervix RPKM: 3.8
Samples: 5
Max RPKM: 6.4
Min RPKM: 2.6
Std RPKM: 1.4
Median RPKM: 3.2
GTEX-S341-1326-SM-4AD72
40-49 years, female
6.4
GTEX-T6MO-1426-SM-4DM73
40-49 years, female
4.3
GTEX-TSE9-2726-SM-4DXSQ
60-69 years, female
3.2
GTEX-TML8-0726-SM-4DXTT
40-49 years, female
2.7
GTEX-S32W-1626-SM-4AD6G
50-59 years, female
2.6
CERVIX, UTERINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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