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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 39.9
Min RPKM: 8.7
Std RPKM: 5.9
Median RPKM: 23.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
39.9
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
38.7
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
38.1
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
37.0
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
35.8
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
33.5
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
33.3
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
33.0
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
32.7
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
32.6
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
32.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
32.0
GTEX-QCQG-1226-SM-48U23
50-59 years, female
31.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
31.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
31.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
30.9
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
30.4
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
30.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
30.3
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
30.2
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
30.0
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
29.8
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
29.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
28.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
28.1
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
27.8
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
27.7
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
27.6
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
27.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
26.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
26.7
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
26.7
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
26.6
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
26.6
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
26.3
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
25.5
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
25.1
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
25.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
24.9
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
24.9
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
24.8
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
24.7
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
24.4
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
24.1
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
23.9
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
23.7
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
23.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
23.6
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
23.3
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
23.2
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
23.2
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
23.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
23.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
22.9
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
22.6
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
22.5
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
22.5
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
22.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
22.4
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
22.4
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
22.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
22.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
22.1
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
22.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
21.9
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
21.8
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
21.7
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
21.6
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
21.6
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
21.5
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
21.4
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
21.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
21.3
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
21.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
20.6
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
20.3
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
20.2
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
20.0
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
19.9
GTEX-11I78-2026-SM-5987C
50-59 years, female
19.7
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
19.5
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
19.4
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
19.0
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
19.0
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
18.6
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
18.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
18.1
GTEX-S341-1226-SM-4AD5S
40-49 years, female
17.0
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
16.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
15.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
15.7
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
15.6
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
13.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
12.7
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
11.1
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
8.7
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.