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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3171.9
Min RPKM: 590.0
Std RPKM: 546.9
Median RPKM: 1368.1
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
3171.9
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
3042.4
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
2888.5
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
2714.5
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
2590.4
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
2384.2
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
2361.1
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
2323.4
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
2225.9
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
2213.2
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
2212.5
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
2191.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
2066.3
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
2023.6
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
2020.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
2010.6
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
1987.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
1945.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
1910.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
1893.1
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
1880.9
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
1857.3
GTEX-QCQG-1226-SM-48U23
50-59 years, female
1828.5
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
1821.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
1733.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
1701.6
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
1671.8
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
1642.6
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
1577.8
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
1571.5
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
1559.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
1555.2
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
1529.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
1527.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
1521.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
1495.0
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
1488.9
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
1477.6
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
1439.1
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
1427.6
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
1419.6
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
1406.6
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
1403.0
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
1394.7
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
1394.2
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
1393.3
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
1393.2
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
1375.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
1360.4
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
1327.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
1326.2
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
1324.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
1315.2
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
1309.9
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
1302.7
GTEX-S341-1226-SM-4AD5S
40-49 years, female
1286.5
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
1273.2
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
1272.0
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
1259.8
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
1252.8
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
1252.3
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
1241.0
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
1238.7
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
1238.5
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
1237.6
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
1232.1
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
1214.2
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
1166.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
1146.7
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
1140.5
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
1139.7
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
1099.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
1010.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
1007.0
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
994.6
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
978.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
963.3
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
948.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
935.9
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
924.7
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
923.9
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
921.5
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
897.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
890.4
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
883.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
849.3
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
841.3
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
837.0
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
795.2
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
784.3
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
764.9
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
695.2
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
646.9
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
615.4
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
615.1
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
590.0
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.