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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 4270.5
Min RPKM: 715.5
Std RPKM: 693.2
Median RPKM: 1314.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
4270.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
3821.4
GTEX-117YX-0326-SM-5GICL
50-59 years, male
3476.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
3456.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
3344.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
3127.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
3034.5
GTEX-1192X-2526-SM-59868
50-59 years, male
2218.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
2198.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
2169.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
1963.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
1949.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
1920.1
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
1863.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
1854.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
1850.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
1842.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
1780.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
1718.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
1698.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
1688.7
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
1606.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
1583.1
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
1573.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
1565.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
1530.1
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
1529.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
1528.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
1526.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
1520.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
1517.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
1487.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
1483.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
1452.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
1452.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
1433.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
1400.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
1383.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
1372.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
1364.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
1346.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
1331.8
GTEX-13O61-1326-SM-5KM31
60-69 years, male
1331.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
1319.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
1310.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
1289.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1284.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
1272.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
1265.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
1260.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
1252.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
1213.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
1200.9
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
1192.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
1155.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
1152.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
1150.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
1125.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
1117.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
1108.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
1107.0
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
1102.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
1099.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
1089.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
1074.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
1065.9
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
1063.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
1037.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
1013.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
993.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
981.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
968.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
956.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
954.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
945.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
943.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
935.0
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
933.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
920.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
911.8
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
904.8
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
885.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
883.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
860.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
818.7
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
773.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
726.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
715.5
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.