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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 696.2
Min RPKM: 85.6
Std RPKM: 131.6
Median RPKM: 295.7
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
696.2
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
634.4
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
604.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
583.9
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
583.7
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
547.1
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
500.2
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
474.7
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
466.2
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
461.2
GTEX-11I78-2026-SM-5987C
50-59 years, female
453.2
GTEX-S341-1226-SM-4AD5S
40-49 years, female
452.1
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
437.7
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
434.7
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
434.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
407.9
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
401.8
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
399.0
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
396.0
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
395.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
389.0
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
384.7
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
382.3
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
381.3
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
372.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
368.1
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
363.7
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
363.4
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
358.6
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
357.5
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
352.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
351.0
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
350.7
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
350.2
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
349.1
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
346.0
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
345.6
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
342.8
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
338.6
GTEX-QCQG-1226-SM-48U23
50-59 years, female
338.1
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
336.9
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
327.4
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
318.9
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
316.2
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
313.1
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
308.7
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
302.8
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
297.0
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
294.4
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
291.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
284.9
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
274.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
266.1
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
265.7
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
262.2
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
260.6
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
253.3
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
251.3
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
250.6
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
240.0
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
237.1
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
236.5
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
227.3
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
225.3
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
219.5
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
213.2
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
208.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
207.4
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
203.5
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
196.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
194.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
194.7
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
187.1
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
182.6
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
180.2
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
179.0
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
173.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
172.9
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
162.9
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
159.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
155.5
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
153.5
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
146.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
145.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
144.2
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
139.7
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
138.7
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
135.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
134.5
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
129.0
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
120.5
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
108.2
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
102.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
89.7
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
87.7
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
85.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.