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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 452.4
Min RPKM: 119.7
Std RPKM: 64.2
Median RPKM: 203.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
452.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
450.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
373.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
362.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
354.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
342.3
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
337.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
294.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
289.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
286.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
281.9
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
270.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
266.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
263.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
262.7
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
260.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
259.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
259.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
258.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
254.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
254.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
251.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
250.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
247.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
245.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
244.5
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
244.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
239.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
237.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
236.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
236.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
233.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
229.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
228.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
223.9
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
223.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
217.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
215.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
213.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
211.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
210.4
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
205.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
204.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
204.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
202.9
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
201.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
200.9
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
200.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
200.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
198.3
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
196.1
GTEX-1192X-2526-SM-59868
50-59 years, male
193.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
191.0
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
190.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
189.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
186.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
186.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
186.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
185.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
183.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
183.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
181.7
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
181.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
180.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
177.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
176.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
173.8
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
172.6
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
171.7
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
171.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
170.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
170.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
168.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
167.4
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
166.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
162.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
157.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
150.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
149.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
145.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
144.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
143.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
142.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
139.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
137.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
133.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
128.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
119.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.