We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 221.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 132.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 125
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 254.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 260.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 206.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 165.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 336.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 818.2
Min RPKM: 21.6
Std RPKM: 123.5
Median RPKM: 134.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
818.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
469.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
449.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
449.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
440.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
440.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
432.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
422.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
399.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
389.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
374.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
369.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
358.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
344.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
338.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
333.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
326.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
313.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
302.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
299.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
260.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
259.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
255.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
237.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
237.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
226.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
225.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
223.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
221.2
GTEX-P78B-1326-SM-3P611
40-49 years, female
214.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
211.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
211.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
210.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
196.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
193.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
190.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
184.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
183.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
182.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
182.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
175.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
174.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
174.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
170.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
169.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
166.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
164.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
159.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
150.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
148.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
146.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
144.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
142.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
141.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
140.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
140.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
137.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
136.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
135.9
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
134.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
132.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
131.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
127.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
125.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
123.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
120.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
117.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
116.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
115.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
114.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
114.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
113.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
112.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
111.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
109.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
108.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
107.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
106.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
106.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
103.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
103.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
101.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
97.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
94.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
91.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
91.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
88.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
87.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
86.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
85.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
85.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
83.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
80.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
79.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
79.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
79.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
79.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
77.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
76.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
75.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
75.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
74.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
74.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
73.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
70.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
70.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
68.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
68.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
63.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
62.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
61.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
61.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
60.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
59.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
59.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
59.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
48.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
41.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
21.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.