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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 558.9
Min RPKM: 90.3
Std RPKM: 71.8
Median RPKM: 202.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
558.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
371.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
331.7
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
327.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
323.2
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
316.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
313.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
304.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
300.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
290.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
283.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
282.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
278.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
275.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
266.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
266.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
262.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
259.0
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
256.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
255.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
251.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
248.1
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
247.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
240.8
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
240.6
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
239.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
237.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
234.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
230.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
229.0
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
228.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
226.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
222.6
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
222.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
218.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
218.5
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
215.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
212.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
212.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
211.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
211.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
208.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
206.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
202.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
202.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
197.1
GTEX-1192X-2526-SM-59868
50-59 years, male
196.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
195.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
195.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
194.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
193.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
192.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
191.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
188.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
188.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
185.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
183.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
183.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
182.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
179.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
175.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
175.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
173.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
170.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
165.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
163.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
162.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
158.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
156.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
153.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
151.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
145.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
144.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
144.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
141.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
137.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
135.3
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
134.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
132.9
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
123.6
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
121.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
113.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
100.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
99.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
98.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
97.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
92.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
90.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.