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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 203.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 147
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 102
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 172.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 222.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 197.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 181.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 247.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 924.7
Min RPKM: 105.0
Std RPKM: 132.8
Median RPKM: 329.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
924.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
825.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
752.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
685.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
626.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
574.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
555.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
553.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
550.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
546.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
545.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
537.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
523.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
523.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
508.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
506.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
484.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
473.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
472.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
451.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
429.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
429.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
423.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
408.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
407.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
406.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
404.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
399.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
399.4
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
394.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
385.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
383.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
381.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
380.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
378.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
376.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
374.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
368.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
360.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
359.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
356.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
354.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
354.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
353.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
353.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
351.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
350.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
347.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
344.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
341.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
340.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
340.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
336.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
336.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
336.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
332.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
332.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
331.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
330.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
329.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
314.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
314.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
314.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
312.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
309.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
309.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
308.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
308.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
305.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
303.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
298.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
295.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
292.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
290.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
289.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
286.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
285.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
281.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
274.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
274.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
273.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
268.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
268.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
268.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
268.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
267.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
267.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
267.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
266.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
266.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
262.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
258.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
258.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
256.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
252.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
252.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
250.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
245.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
240.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
229.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
229.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
229.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
229.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
227.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
227.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
222.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
215.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
212.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
206.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
201.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
201.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
196.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
193.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
189.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
176.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
171.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
150.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
145.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
105.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.