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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 745.8
Min RPKM: 113.1
Std RPKM: 114.3
Median RPKM: 265.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
745.8
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
671.3
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
490.3
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
485.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
473.9
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
468.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
460.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
456.0
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
427.6
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
425.4
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
414.6
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
404.1
GTEX-11I78-2026-SM-5987C
50-59 years, female
403.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
399.1
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
394.7
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
393.7
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
391.1
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
374.4
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
362.7
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
360.9
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
354.3
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
354.0
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
349.2
GTEX-S341-1226-SM-4AD5S
40-49 years, female
340.7
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
340.4
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
339.4
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
336.4
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
334.5
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
328.8
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
327.5
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
321.9
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
320.6
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
310.8
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
307.7
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
305.7
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
302.9
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
301.0
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
300.7
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
300.5
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
296.9
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
295.5
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
291.1
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
290.6
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
289.9
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
267.8
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
267.0
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
265.9
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
265.6
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
264.8
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
262.3
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
255.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
253.7
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
251.4
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
247.5
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
243.5
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
242.6
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
239.5
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
238.6
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
237.9
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
232.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
227.4
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
220.6
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
220.0
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
216.7
GTEX-QCQG-1226-SM-48U23
50-59 years, female
215.0
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
214.7
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
212.1
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
212.0
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
208.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
206.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
205.6
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
205.6
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
203.3
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
203.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
195.2
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
179.1
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
175.1
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
170.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
168.6
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
168.1
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
166.1
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
164.0
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
163.7
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
158.2
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
153.8
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
153.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
151.3
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
145.7
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
144.9
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
142.3
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
137.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
133.5
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
125.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
124.6
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
113.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
113.1
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.