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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 214.3
Min RPKM: 51.8
Std RPKM: 29.0
Median RPKM: 101.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
214.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
194.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
174.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
173.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
163.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
148.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
144.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
142.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
141.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
138.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
135.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
132.8
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
130.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
130.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
129.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
129.1
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
126.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
124.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
124.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
121.7
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
120.7
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
120.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
120.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
119.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
117.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
117.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
116.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
116.3
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
115.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
115.3
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
113.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
112.7
GTEX-1192X-2526-SM-59868
50-59 years, male
110.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
110.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
109.8
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
109.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
107.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
106.6
GTEX-13O61-1326-SM-5KM31
60-69 years, male
106.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
106.0
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
104.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
103.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
103.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
102.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
100.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
99.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
99.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
98.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
97.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
95.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
95.2
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
94.1
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
94.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
93.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
93.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
92.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
92.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
90.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
89.6
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
88.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
88.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
88.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
86.6
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
85.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
85.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
83.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
83.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
83.1
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
82.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
82.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
81.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
81.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
81.0
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
80.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
79.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
79.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
76.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
75.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
75.1
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
73.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
73.1
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
72.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
72.8
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
71.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
61.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
61.7
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
55.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
51.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.