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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 597.5
Min RPKM: 136.8
Std RPKM: 90.0
Median RPKM: 246.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
597.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
507.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
483.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
462.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
433.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
423.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
412.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
398.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
391.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
390.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
389.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
384.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
378.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
371.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
362.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
361.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
352.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
349.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
344.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
342.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
338.3
GTEX-1192X-2526-SM-59868
50-59 years, male
335.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
332.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
328.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
311.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
301.8
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
301.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
297.1
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
292.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
291.7
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
285.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
284.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
275.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
267.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
264.7
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
264.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
263.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
262.6
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
257.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
253.1
GTEX-13111-1426-SM-5DUW3
50-59 years, male
249.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
248.3
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
248.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
246.6
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
245.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
245.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
244.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
243.3
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
243.3
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
240.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
240.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
235.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
233.3
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
233.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
232.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
232.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
231.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
226.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
226.7
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
217.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
217.3
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
217.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
214.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
214.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
212.2
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
211.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
210.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
206.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
206.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
205.2
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
203.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
194.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
192.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
190.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
187.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
186.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
182.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
178.0
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
177.0
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
168.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
166.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
165.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
156.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
156.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
153.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
145.8
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
140.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
136.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.