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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 87.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 29.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 13.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 39.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 42.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 63.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 57.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 42.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 792.6
Min RPKM: 7.3
Std RPKM: 202.6
Median RPKM: 177.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
792.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
788.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
744.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
732.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
701.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
696.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
676.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
667.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
584.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
580.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
578.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
554.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
519.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
516.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
514.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
514.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
495.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
486.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
483.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
469.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
447.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
445.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
443.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
440.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
439.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
436.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
413.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
397.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
391.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
381.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
379.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
375.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
375.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
365.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
361.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
356.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
351.0
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
350.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
331.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
328.6
GTEX-R53T-0326-SM-48FEC
50-59 years, female
319.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
319.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
318.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
296.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
296.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
281.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
275.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
254.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
248.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
242.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
235.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
217.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
212.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
205.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
202.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
202.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
201.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
193.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
191.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
177.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
176.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
169.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
169.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
166.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
165.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
164.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
164.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
157.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
157.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
143.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
141.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
139.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
137.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
135.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
130.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
128.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
128.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
115.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
111.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
110.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
103.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
103.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
94.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
89.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
88.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
88.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
87.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
87.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
83.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
82.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
82.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
77.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
74.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
70.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
67.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
67.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
67.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
64.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
59.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
56.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
55.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
54.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
53.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
49.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
47.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
44.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
40.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
40.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
39.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
39.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
38.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
37.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
34.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
31.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
29.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
25.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
23.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
19.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
7.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.