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COLON - Expression summary
RNA expressioni
HPA:84.9TPM
GTEx:44.2RPKM
FANTOM5:165.3Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 84.9
overview Male, age 54 Sample 1
TPM: 101
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 69.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 66.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 66.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 76.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 83.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 100.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 84.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 90
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 101.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 108.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 85.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 68.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 44.2
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 36.6
Samples: 149

Max RPKM: 69.7
Min RPKM: 26.1
Std RPKM: 6.8
Median RPKM: 34.8
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 69.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 60.2
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 59.4
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 55.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 52.0
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 51.7
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 49.7
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 49.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 49.1
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 48.2
Show all
Colon - Transverse
RPKM: 50.0
Samples: 196

Max RPKM: 120.8
Min RPKM: 27.8
Std RPKM: 15.4
Median RPKM: 47.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 120.8
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 111.8
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 110.1
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 93.3
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 92.2
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 87.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 85.3
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 80.7
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 79.2
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 78.5
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 165.3
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 149.7
FF:10014-101C5 62,83,84 years, mixed 165.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.