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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 690.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 577
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 365.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 791.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 788.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 770.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 849.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1381.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 587.5
Min RPKM: 82.2
Std RPKM: 108.3
Median RPKM: 286.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
587.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
566.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
558.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
507.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
503.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
494.6
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
491.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
489.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
488.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
478.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
473.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
472.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
468.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
463.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
456.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
451.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
450.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
442.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
439.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
439.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
431.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
421.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
420.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
418.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
406.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
403.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
388.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
388.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
383.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
383.8
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
375.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
364.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
362.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
361.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
361.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
360.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
358.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
357.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
349.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
348.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
348.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
348.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
338.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
334.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
329.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
327.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
325.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
323.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
318.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
317.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
315.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
313.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
306.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
304.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
298.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
297.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
294.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
288.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
286.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
286.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
285.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
284.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
283.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
282.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
280.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
271.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
270.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
267.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
265.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
264.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
262.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
262.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
260.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
259.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
258.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
254.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
254.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
252.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
248.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
245.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
244.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
242.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
242.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
239.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
236.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
236.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
235.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
235.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
235.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
234.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
230.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
229.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
228.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
224.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
219.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
212.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
211.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
210.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
205.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
202.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
202.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
198.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
192.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
189.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
187.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
187.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
185.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
184.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
184.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
178.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
173.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
166.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
160.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
149.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
128.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
127.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
120.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
86.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
82.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.